src Directory Reference

Files
file	advection_diffusion_equation_routines.f90 [code]
	This module handles all diffusion equation routines.
file	advection_equation_routines.f90 [code]
	This module handles pure advection equation routines.
file	analytic_analysis_routines.f90 [code]
	This module handles all analytic analysis routines.
file	base_routines.f90 [code]
	This module contains all the low-level base routines e.g., all debug, control, and low-level communication routines.
file	basis_routines.f90 [code]
	This module contains all basis function routines.
file	binary_file_c.c [code]
file	binary_file_f.f90 [code]
	This module handles the reading and writing of binary files.
file	biodomain_equation_routines.f90 [code]
	This module handles all bioelectric domain equation routines.
file	bioelectric_finite_elasticity_routines.f90 [code]
	This module handles all routines pertaining to bioelectrics coupled with finite elasticity.
file	bioelectric_routines.f90 [code]
	This module handles all bioelectric routines.
file	blas.f90 [code]
	This module contains the interface descriptions to the BLAS routines.
file	boundary_condition_routines.f90 [code]
	This module set the boundary conditions for the given equation set.
file	Burgers_equation_routines.f90 [code]
	This module handles all Burgers equation routines.
file	characteristic_equation_routines.f90 [code]
	This module handles the characteristic equation routines. These equations are often used in concert with 1D fluid modelling to describe wave propagation phenomena, which is particularly useful for models of vascular trees. These equations are also often solved using a discontinuous nodal solution method, rather than FEM.
file	classical_field_routines.f90 [code]
	This module handles all classical field routines.
file	cmiss.f90 [code]
	The top level OpenCMISS Iron module.
file	cmiss_c.c [code]
file	cmiss_cellml.f90 [code]
	This module is a OpenCMISS(cm) buffer module to OpenCMISS(cellml).
file	cmiss_fortran_c.f90 [code]
	This module contains Fortran and C data conversion routines.
file	cmiss_mpi.f90 [code]
	This module contains CMISS MPI routines.
file	cmiss_parmetis.f90 [code]
	This module is a CMISS buffer module to the ParMETIS library.
file	cmiss_petsc.f90 [code]
	This module is a CMISS buffer module to the PETSc library.
file	cmiss_petsc_types.f90 [code]
	This module contains type definitions related to the PETSc library.
file	computational_environment.f90 [code]
	This module contains all computational environment variables.
file	constants.f90 [code]
	This module contains all program wide constants.
file	control_loop_routines.f90 [code]
	This module handles all control loop routines.
file	coordinate_routines.f90 [code]
	This module contains all coordinate transformation and support routines.
file	Darcy_equations_routines.f90 [code]
	This module handles all Darcy equations routines.
file	Darcy_pressure_equations_routines.f90 [code]
	This module handles all Darcy pressure equations routines to be coupled with finite elasticity.
file	data_point_routines.f90 [code]
file	data_projection_routines.f90 [code]
	This module handles all data projection routines.
file	diffusion_advection_diffusion_routines.f90 [code]
	This module handles all routines pertaining to diffusion coupled to diffusion.
file	diffusion_diffusion_routines.f90 [code]
	This module handles all routines pertaining to diffusion coupled to diffusion.
file	diffusion_equation_routines.f90 [code]
	This module handles all diffusion equation routines.
file	distributed_matrix_vector.f90 [code]
	This module handles all distributed matrix vector routines.
file	distributed_matrix_vector_IO.f90 [code]
	This module handles all distributed matrix vector IO routines.
file	dllexport.h [code]
file	domain_mappings.f90 [code]
	This module handles all domain mappings routines.
file	elasticity_routines.f90 [code]
	This module handles all elasticity routines.
file	electromechanics_routines.f90 [code]
	This module handles all electromechanics routines.
file	electrophysiology_cell_routines.f90 [code]
	This module contains some hardcoded cell models and integration routines for cardiac electrophysiology.
file	equations_mapping_routines.f90 [code]
	This module handles all equations mapping routines.
file	equations_matrices_routines.f90 [code]
	This module handles all equations matrix and rhs routines.
file	equations_routines.f90 [code]
	This module handles all equations routines.
file	equations_set_constants.f90 [code]
	This module handles all constants shared across equations set routines.
file	equations_set_routines.f90 [code]
	This module handles all equations set routines.
file	external_dae_solver_routines.c [code]
file	external_dae_solver_routines.h [code]
file	field_IO_routines.f90 [code]
	ThiS module handles parallel Io. Using mpi2 and parall print function, formatted text and binary IO are supported in openCMISS.
file	field_routines.f90 [code]
file	FieldExport.c [code]
file	FieldExport.h [code]
file	FieldExportConstants.h [code]
file	fieldml_input_routines.f90 [code]
	This module handles reading in FieldML files.
file	fieldml_output_routines.f90 [code]
	This module handles writing out FieldML files.
file	fieldml_types.f90 [code]
	This module handles non-IO FieldML logic.
file	fieldml_util_routines.f90 [code]
	This module handles non-IO FieldML logic.
file	finite_elasticity_Darcy_routines.f90 [code]
	This module handles all routines pertaining to finite elasticity coupled with Darcy.
file	finite_elasticity_fluid_pressure_routines.f90 [code]
	This module handles all routines pertaining to finite elasticity coupled with fluid pressure for poroelasticity.
file	finite_elasticity_routines.f90 [code]
	This module handles all finite elasticity routines.
file	fitting_routines.f90 [code]
	This module handles all fitting routines.
file	fluid_mechanics_IO_routines.f90 [code]
	This module handles some mesh/parameter input routines and cmgui output routines for fluid mechanics routines and should be eventually replaces by field_IO_routines.f90.
file	fluid_mechanics_routines.f90 [code]
	This module handles all fluid mechanics routines.
file	fsi_routines.f90 [code]
	This module handles all routines pertaining to finite elasticity coupled with navier stokes for fsi problems.
file	generated_mesh_routines.f90 [code]
file	Hamilton_Jacobi_equations_routines.f90 [code]
	This module handles all Hamilton-Jacobi equations routines.
file	Helmholtz_equations_routines.f90 [code]
	This module handles all Helmholtz equations routines.
file	Helmholtz_TEMPLATE_equations_routines.f90 [code]
	This module handles all Helmholtz equations routines.
file	history_routines.f90 [code]
	This module handles all history file routines.
file	input_output.f90 [code]
	This module handles all formating and input and output.
file	interface_conditions_constants.f90 [code]
	This module handles all constants shared across interface condition routines.
file	interface_conditions_routines.f90 [code]
file	interface_equations_routines.f90 [code]
	This module handles all interface equations routines.
file	interface_mapping_routines.f90 [code]
	This module contains all interface mapping routines.
file	interface_matrices_constants.f90 [code]
	This module handles all constants shared across interface condition routines.
file	interface_matrices_routines.f90 [code]
file	interface_operators_routines.f90 [code]
file	interface_routines.f90 [code]
file	iso_varying_string.f90 [code]
file	kinds.f90 [code]
	This module contains all kind definitions.
file	lapack.f90 [code]
	This module contains the interface descriptions to the LAPACK routines.
file	Laplace_equations_routines.f90 [code]
	This module handles all Laplace equations routines.
file	linear_elasticity_routines.f90 [code]
	This module handles all linear elasticity routines.
file	linkedlist_routines.f90 [code]
file	lists.f90 [code]
	Implements lists of base types.
file	machine_constants_aix.f90 [code]
	This module contains all machine dependent constants for AIX systems.
file	machine_constants_irix.f90 [code]
	This module contains all machine dependent constants for IRIX systems.
file	machine_constants_linux.f90 [code]
	This module contains all machine dependent constants for Linux systems.
file	machine_constants_vms.f90 [code]
	This module contains all machine dependent constants for VMS systems.
file	machine_constants_win32.f90 [code]
	This module contains all machine dependent constants for Win32 systems.
file	macros.h [code]
file	maths.f90 [code]
	This module contains all mathematics support routines.
file	matrix_vector.f90 [code]
	This module contains all routines dealing with (non-distributed) matrix and vectors types.
file	mesh_routines.f90 [code]
file	monodomain_equations_routines.f90 [code]
	This module handles all Monodomain equations routines which use Strang Splitting with hard-coded cell models.
file	multi_compartment_transport_routines.f90 [code]
	This module handles all routines pertaining to diffusion coupled to diffusion.
file	multi_physics_routines.f90 [code]
	$Id: multi_physics_routines.f90 177 2009-04-20
file	Navier_Stokes_equations_routines.f90 [code]
	This module handles all Navier-Stokes fluid routines.
file	node_routines.f90 [code]
file	opencmiss.f90 [code]
	The top level OpenCMISS module.
file	opencmiss_iron.f90 [code]
	The top level OpenCMISS Iron module.
file	Poiseuille_equations_routines.f90 [code]
	This module handles all Poiseuille equations routines.
file	Poisson_equations_routines.f90 [code]
	This module handles all Poisson equations routines.
file	problem_constants.f90 [code]
	This module handles all problem wide constants.
file	problem_routines.f90 [code]
file	reaction_diffusion_equation_routines.f90 [code]
	This module handles all reaction diffusion equation routines.
file	reaction_diffusion_IO_routines.f90 [code]
	This module handles some mesh/parameter input routines and cmgui output routines for reaction diffusion routines and should be eventually replaces by field_IO_routines.f90.
file	region_routines.f90 [code]
	This module contains all region routines.
file	solver_mapping_routines.f90 [code]
	This module handles all solver mapping routines.
file	solver_matrices_routines.f90 [code]
	This module handles all solver matrix and rhs routines.
file	solver_routines.f90 [code]
	This module handles all solver routines.
file	sorting.f90 [code]
	This module contains all procedures for sorting. NOTE: THE ROUTINES IN THIS MODULE HAVE NOT BEEN TESTED!!!
file	Stokes_equations_routines.f90 [code]
	$Id: Stokes_equations_routines.f90 372 2009-04-20
file	stree_equation_routines.f90 [code]
	This module handles the Stree equation routines. These equations are often used in concert with 1D fluid modelling to describe wave propagation phenomena, which is particularly useful for models of vascular trees. These equations are also often solved using a discontinuous nodal solution method, rather than FEM.
file	strings.f90 [code]
	This module contains all string manipulation and transformation routines.
file	test_framework_routines.f90 [code]
	This module handles all analytic analysis routines.
file	timer_c.c [code]
file	timer_f.f90 [code]
	This module contains routines for timing the program.
file	trees.f90 [code]
	Implements trees of base types.
file	types.f90 [code]
	This module contains all type definitions in order to avoid cyclic module references.
file	util_array.f90 [code]
	This module contains various routines for manipulating arrays.