OpenCMISSIron Internal API Documentation

This module handles all routines pertaining to bioelectrics coupled with finite elasticity. More...
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Modules  
module  bioelectric_finite_elasticity_routines 
This module handles all routines pertaining to bioelectrics coupled with finite elasticity.  
Functions/Subroutines  
subroutine, public  bioelectric_finite_elasticity_routines::bioelectricfiniteelasticity_equationssetsolutionmethodset (EQUATIONS_SET, SOLUTION_METHOD, ERR, ERROR,) 
Sets/changes the solution method for a bioelectrics finite elasticity equation type of a multi physics equations set class. More...  
subroutine, public  bioelectric_finite_elasticity_routines::bioelectricfiniteelasticity_equationssetsetup (EQUATIONS_SET, EQUATIONS_SET_SETUP, ERR, ERROR,) 
Sets up the bioelectrics finite elasticity equation. More...  
subroutine, public  bioelectric_finite_elasticity_routines::bioelectricfiniteelasticity_finiteelementcalculate (EQUATIONS_SET, ELEMENT_NUMBER, ERR, ERROR,) 
Calculates the element stiffness matrices and RHS for a bioelectrics finite elasticity equation finite element equations set. More...  
subroutine, public  bioelectric_finite_elasticity_routines::bioelectricfiniteelasticity_problemspecificationset (problem, problemSpecification, err, error,) 
Sets the problem specification for a bioelectric finite elasticity problem type . More...  
subroutine, public  bioelectric_finite_elasticity_routines::bioelectric_finite_elasticity_problem_setup (PROBLEM, PROBLEM_SETUP, ERR, ERROR,) 
Sets up the bioelectric finite elasticity problem. More...  
subroutine, public  bioelectric_finite_elasticity_routines::bioelectric_finite_elasticity_pre_solve (CONTROL_LOOP, SOLVER, ERR, ERROR,) 
Sets up the bioelectrics finite elasticity problem presolve. More...  
subroutine, public  bioelectric_finite_elasticity_routines::bioelectric_finite_elasticity_post_solve (CONTROL_LOOP, SOLVER, ERR, ERROR,) 
Sets up the bioelectrics finite elasticity problem post solve. More...  
subroutine, public  bioelectric_finite_elasticity_routines::bioelectricfiniteelasticity_controllooppreloop (CONTROL_LOOP, ERR, ERROR,) 
Sets up the bioelectrics finite elasticity problem precontrol loop. More...  
subroutine  bioelectric_finite_elasticity_routines::bioelectricfiniteelasticity_computefibrestretch (CONTROL_LOOP, ERR, ERROR,) 
Computes the fibre stretch for bioelectrics finite elasticity problems. More...  
subroutine  bioelectric_finite_elasticity_routines::bioelectricfiniteelasticity_forcelengthvelocityrelation (CONTROL_LOOP, ERR, ERROR,) 
Computes the bioelectrics finite elasticity forcelength and force_velocity relations. More...  
subroutine, public  bioelectric_finite_elasticity_routines::bioelectricfiniteelasticity_controllooppostloop (CONTROL_LOOP, ERR, ERROR,) 
Sets up the bioelectrics finite elasticity problem postcontrol loop. More...  
subroutine  bioelectric_finite_elasticity_routines::bioelectricfiniteelasticity_convergencecheck (CONTROL_LOOP, ERR, ERROR,) 
Check for the convergence of the bioelectric finite elasticity while loop, i.e., if the forcelength and forcevelocity relations yielded a different actual configuration. More...  
subroutine, public  bioelectric_finite_elasticity_routines::bioelectricfiniteelasticity_updategeometricfield (CONTROL_LOOP, CALC_CLOSEST_GAUSS_POINT, ERR, ERROR,) 
Update the the bioelectric equation geometric field from the finite elasticity dependent field (deformed geometry) NOTE: this is only temporary  will be replaced once embedded meshes are available. More...  
subroutine  bioelectric_finite_elasticity_routines::bioelectricfiniteelasticity_independentfieldinterpolate (CONTROL_LOOP, ERR, ERROR,) 
Interpolates the finite elasticity independent field from the biolectrics independent field. NOTE: this is only temporary  will be replaced once embedded meshes are available. More...  
subroutine  bioelectric_finite_elasticity_routines::bioelectric_finite_elasticity_compute_titin (CONTROL_LOOP, ERR, ERROR,) 
Computes force enhancement based on the titin model of C Rode et al. (2009). Force depression is not yet implemented. Titininduced force enhancement and force depression: A 'stickyspring' mechanism in muscle contractions? C Rode, T Siebert, R Blickhan  Journal of theoretical biology, 2009. More...  
This module handles all routines pertaining to bioelectrics coupled with finite elasticity.
Version: MPL 1.1/GPL 2.0/LGPL 2.1
The contents of this file are subject to the Mozilla Public License Version 1.1 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.mozilla.org/MPL/
Software distributed under the License is distributed on an "AS IS" basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the License for the specific language governing rights and limitations under the License.
The Original Code is OpenCMISS
The Initial Developer of the Original Code is University of Auckland, Auckland, New Zealand, the University of Oxford, Oxford, United Kingdom and King's College, London, United Kingdom. Portions created by the University of Auckland, the University of Oxford and King's College, London are Copyright (C) 20072010 by the University of Auckland, the University of Oxford and King's College, London. All Rights Reserved.
Contributor(s): Thomas Klotz
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Definition in file bioelectric_finite_elasticity_routines.f90.