- Generated on Mon Apr 9 2018 20:02:19 for OpenCMISS-Iron Internal API Documentation by
1.8.11
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OpenCMISS-Iron Internal API Documentation
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This module handles all routines pertaining to bioelectrics coupled with finite elasticity. More...
Go to the source code of this file.
Modules | |
| module | bioelectric_finite_elasticity_routines |
| This module handles all routines pertaining to bioelectrics coupled with finite elasticity. | |
Functions/Subroutines | |
| subroutine, public | bioelectric_finite_elasticity_routines::bioelectricfiniteelasticity_equationssetsolutionmethodset (EQUATIONS_SET, SOLUTION_METHOD, ERR, ERROR,) |
| Sets/changes the solution method for a bioelectrics finite elasticity equation type of a multi physics equations set class. More... | |
| subroutine, public | bioelectric_finite_elasticity_routines::bioelectricfiniteelasticity_equationssetsetup (EQUATIONS_SET, EQUATIONS_SET_SETUP, ERR, ERROR,) |
| Sets up the bioelectrics finite elasticity equation. More... | |
| subroutine, public | bioelectric_finite_elasticity_routines::bioelectricfiniteelasticity_finiteelementcalculate (EQUATIONS_SET, ELEMENT_NUMBER, ERR, ERROR,) |
| Calculates the element stiffness matrices and RHS for a bioelectrics finite elasticity equation finite element equations set. More... | |
| subroutine, public | bioelectric_finite_elasticity_routines::bioelectricfiniteelasticity_problemspecificationset (problem, problemSpecification, err, error,) |
| Sets the problem specification for a bioelectric finite elasticity problem type . More... | |
| subroutine, public | bioelectric_finite_elasticity_routines::bioelectric_finite_elasticity_problem_setup (PROBLEM, PROBLEM_SETUP, ERR, ERROR,) |
| Sets up the bioelectric finite elasticity problem. More... | |
| subroutine, public | bioelectric_finite_elasticity_routines::bioelectric_finite_elasticity_pre_solve (CONTROL_LOOP, SOLVER, ERR, ERROR,) |
| Sets up the bioelectrics finite elasticity problem pre-solve. More... | |
| subroutine, public | bioelectric_finite_elasticity_routines::bioelectric_finite_elasticity_post_solve (CONTROL_LOOP, SOLVER, ERR, ERROR,) |
| Sets up the bioelectrics finite elasticity problem post solve. More... | |
| subroutine, public | bioelectric_finite_elasticity_routines::bioelectricfiniteelasticity_controllooppreloop (CONTROL_LOOP, ERR, ERROR,) |
| Sets up the bioelectrics finite elasticity problem pre-control loop. More... | |
| subroutine | bioelectric_finite_elasticity_routines::bioelectricfiniteelasticity_computefibrestretch (CONTROL_LOOP, ERR, ERROR,) |
| Computes the fibre stretch for bioelectrics finite elasticity problems. More... | |
| subroutine | bioelectric_finite_elasticity_routines::bioelectricfiniteelasticity_forcelengthvelocityrelation (CONTROL_LOOP, ERR, ERROR,) |
| Computes the bioelectrics finite elasticity force-length and force_velocity relations. More... | |
| subroutine, public | bioelectric_finite_elasticity_routines::bioelectricfiniteelasticity_controllooppostloop (CONTROL_LOOP, ERR, ERROR,) |
| Sets up the bioelectrics finite elasticity problem post-control loop. More... | |
| subroutine | bioelectric_finite_elasticity_routines::bioelectricfiniteelasticity_convergencecheck (CONTROL_LOOP, ERR, ERROR,) |
| Check for the convergence of the bioelectric finite elasticity while loop, i.e., if the force-length and force-velocity relations yielded a different actual configuration. More... | |
| subroutine, public | bioelectric_finite_elasticity_routines::bioelectricfiniteelasticity_updategeometricfield (CONTROL_LOOP, CALC_CLOSEST_GAUSS_POINT, ERR, ERROR,) |
| Update the the bioelectric equation geometric field from the finite elasticity dependent field (deformed geometry) NOTE: this is only temporary - will be replaced once embedded meshes are available. More... | |
| subroutine | bioelectric_finite_elasticity_routines::bioelectricfiniteelasticity_independentfieldinterpolate (CONTROL_LOOP, ERR, ERROR,) |
| Interpolates the finite elasticity independent field from the biolectrics independent field. NOTE: this is only temporary - will be replaced once embedded meshes are available. More... | |
| subroutine | bioelectric_finite_elasticity_routines::bioelectric_finite_elasticity_compute_titin (CONTROL_LOOP, ERR, ERROR,) |
| Computes force enhancement based on the titin model of C Rode et al. (2009). Force depression is not yet implemented. Titin-induced force enhancement and force depression: A 'sticky-spring' mechanism in muscle contractions? C Rode, T Siebert, R Blickhan - Journal of theoretical biology, 2009. More... | |
This module handles all routines pertaining to bioelectrics coupled with finite elasticity.
Version: MPL 1.1/GPL 2.0/LGPL 2.1
The contents of this file are subject to the Mozilla Public License Version 1.1 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.mozilla.org/MPL/
Software distributed under the License is distributed on an "AS IS" basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the License for the specific language governing rights and limitations under the License.
The Original Code is OpenCMISS
The Initial Developer of the Original Code is University of Auckland, Auckland, New Zealand, the University of Oxford, Oxford, United Kingdom and King's College, London, United Kingdom. Portions created by the University of Auckland, the University of Oxford and King's College, London are Copyright (C) 2007-2010 by the University of Auckland, the University of Oxford and King's College, London. All Rights Reserved.
Contributor(s): Thomas Klotz
Alternatively, the contents of this file may be used under the terms of either the GNU General Public License Version 2 or later (the "GPL"), or the GNU Lesser General Public License Version 2.1 or later (the "LGPL"), in which case the provisions of the GPL or the LGPL are applicable instead of those above. If you wish to allow use of your version of this file only under the terms of either the GPL or the LGPL, and not to allow others to use your version of this file under the terms of the MPL, indicate your decision by deleting the provisions above and replace them with the notice and other provisions required by the GPL or the LGPL. If you do not delete the provisions above, a recipient may use your version of this file under the terms of any one of the MPL, the GPL or the LGPL.
Definition in file bioelectric_finite_elasticity_routines.f90.
1.8.11