OpenCMISS-Iron Internal API Documentation
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echo_file_unit :
base_routines
echo_output :
base_routines
element_number :
fluid_mechanics_io_routines
elementnodes :
fluid_mechanics_io_routines
elementnodesscales :
fluid_mechanics_io_routines
equations_element_matrix_output :
equations_routines
equations_first_order_dynamic :
equations_set_constants
equations_full_matrices :
equations_routines
equations_jacobian_analytic_calculated :
equations_matrices_routines
equations_jacobian_finite_difference_calculated :
equations_matrices_routines
equations_linear :
equations_set_constants
equations_lumped_matrices :
equations_routines
equations_matrices_all :
equations_matrices_routines
equations_matrices_dynamic_only :
equations_matrices_routines
equations_matrices_full_matrices :
equations_matrices_routines
equations_matrices_jacobian_only :
equations_matrices_routines
equations_matrices_linear_only :
equations_matrices_routines
equations_matrices_nonlinear_only :
equations_matrices_routines
equations_matrices_residual_only :
equations_matrices_routines
equations_matrices_residual_source_only :
equations_matrices_routines
equations_matrices_rhs_only :
equations_matrices_routines
equations_matrices_rhs_residual_only :
equations_matrices_routines
equations_matrices_rhs_source_only :
equations_matrices_routines
equations_matrices_source_only :
equations_matrices_routines
equations_matrices_sparse_matrices :
equations_matrices_routines
equations_matrices_vectors_only :
equations_matrices_routines
equations_matrix_damping :
equations_set_constants
equations_matrix_diagonal_structure :
equations_matrices_routines
equations_matrix_fem_structure :
equations_matrices_routines
equations_matrix_lumped :
equations_matrices_routines
equations_matrix_mass :
equations_set_constants
equations_matrix_no_structure :
equations_matrices_routines
equations_matrix_nodal_structure :
equations_matrices_routines
equations_matrix_output :
equations_routines
equations_matrix_stiffness :
equations_set_constants
equations_matrix_unlumped :
equations_matrices_routines
equations_no_output :
equations_routines
equations_nodal_matrix_output :
equations_routines
equations_nonlinear :
equations_set_constants
equations_nonlinear_bcs :
equations_set_constants
equations_quasistatic :
equations_set_constants
equations_second_order_dynamic :
equations_set_constants
equations_set_1d3d_monodomain_active_strain_subtype :
equations_set_constants
equations_set_1d3d_monodomain_elasticity_subtype :
equations_set_constants
equations_set_active_strain_subtype :
equations_set_constants
equations_set_activecontraction_subtype :
equations_set_constants
equations_set_advection_diffusion_equation_two_dim_1 :
equations_set_constants
equations_set_advection_diffusion_equation_type :
equations_set_constants
equations_set_advection_equation_type :
equations_set_constants
equations_set_advection_subtype :
equations_set_constants
equations_set_ale_darcy_subtype :
equations_set_constants
equations_set_ale_navier_stokes_subtype :
equations_set_constants
equations_set_ale_pressure_poisson_subtype :
equations_set_constants
equations_set_ale_stokes_subtype :
equations_set_constants
equations_set_anisotropic_polynomial_active_subtype :
equations_set_constants
equations_set_anisotropic_polynomial_subtype :
equations_set_constants
equations_set_bem_solution_method :
equations_set_constants
equations_set_bidomain_equation_type :
equations_set_constants
equations_set_bifurcation_navier_stokes_subtype :
equations_set_constants
equations_set_biharmonic_equation_type :
equations_set_constants
equations_set_bioelectrics_class :
equations_set_constants
equations_set_burgers_equation_one_dim_1 :
equations_set_constants
equations_set_burgers_equation_type :
equations_set_constants
equations_set_burgers_subtype :
equations_set_constants
equations_set_cellml_reac_no_split_reac_diff_subtype :
equations_set_constants
equations_set_cellml_reac_split_reac_diff_subtype :
equations_set_constants
equations_set_characteristic_equation_type :
equations_set_constants
equations_set_characteristic_subtype :
equations_set_constants
equations_set_classical_field_class :
equations_set_constants
equations_set_compressible_activecontraction_subtype :
equations_set_constants
equations_set_compressible_finite_elasticity_subtype :
equations_set_constants
equations_set_constant_reac_diff_subtype :
equations_set_constants
equations_set_constant_source_advection_diff_supg_subtype :
equations_set_constants
equations_set_constant_source_advection_diffusion_subtype :
equations_set_constants
equations_set_constant_source_ale_advection_diff_supg_subtype :
equations_set_constants
equations_set_constant_source_ale_advection_diffusion_subtype :
equations_set_constants
equations_set_constant_source_ale_diffusion_subtype :
equations_set_constants
equations_set_constant_source_diffusion_subtype :
equations_set_constants
equations_set_constant_source_poisson_subtype :
equations_set_constants
equations_set_constant_source_static_advec_diff_subtype :
equations_set_constants
equations_set_constant_source_static_advec_diff_supg_subtype :
equations_set_constants
equations_set_constitutive_and_growth_law_in_cellml_subtype :
equations_set_constants
equations_set_constitutive_law_in_cellml_evaluate_subtype :
equations_set_constants
equations_set_constitutive_mu_navier_stokes_subtype :
equations_set_constants
equations_set_coupled1d0d_adv_navier_stokes_subtype :
equations_set_constants
equations_set_coupled1d0d_navier_stokes_subtype :
equations_set_constants
equations_set_coupled_source_diffusion_advec_diffusion_subtype :
equations_set_constants
equations_set_coupled_source_diffusion_diffusion_subtype :
equations_set_constants
equations_set_darcy_equation_three_dim_1 :
equations_set_constants
equations_set_darcy_equation_three_dim_2 :
equations_set_constants
equations_set_darcy_equation_three_dim_3 :
equations_set_constants
equations_set_darcy_equation_two_dim_1 :
equations_set_constants
equations_set_darcy_equation_two_dim_2 :
equations_set_constants
equations_set_darcy_equation_two_dim_3 :
equations_set_constants
equations_set_darcy_equation_type :
equations_set_constants
equations_set_darcy_pressure_equation_type :
equations_set_constants
equations_set_data_fitting_equation_type :
equations_set_constants
equations_set_derived_strain :
equations_set_constants
equations_set_derived_stress :
equations_set_constants
equations_set_diffusion_advection_diffusion_type :
equations_set_constants
equations_set_diffusion_diffusion_type :
equations_set_constants
equations_set_diffusion_equation_one_dim_1 :
equations_set_constants
equations_set_diffusion_equation_three_dim_1 :
equations_set_constants
equations_set_diffusion_equation_two_dim_1 :
equations_set_constants
equations_set_diffusion_equation_type :
equations_set_constants
equations_set_divfree_vector_data_fitting_subtype :
equations_set_constants
equations_set_divfree_vector_data_pre_fitting_subtype :
equations_set_constants
equations_set_dynamic_poiseuille_subtype :
equations_set_constants
equations_set_elasticity_class :
equations_set_constants
equations_set_elasticity_darcy_inria_model_subtype :
equations_set_constants
equations_set_elasticity_fluid_pres_holmes_mow_active_subtype :
equations_set_constants
equations_set_elasticity_fluid_pressure_holmes_mow_subtype :
equations_set_constants
equations_set_elasticity_fluid_pressure_static_inria_subtype :
equations_set_constants
equations_set_elasticity_multi_compartment_darcy_inria_subtype :
equations_set_constants
equations_set_electromagnetics_class :
equations_set_constants
equations_set_electrostatic_type :
equations_set_constants
equations_set_evaluate_cauchy_stress_tensor :
equations_set_constants
equations_set_evaluate_deformation_gradient_tensor :
equations_set_constants
equations_set_evaluate_green_lagrange_strain_tensor :
equations_set_constants
equations_set_evaluate_r_cauchy_green_deformation_tensor :
equations_set_constants
equations_set_evaluate_second_pk_stress_tensor :
equations_set_constants
equations_set_exp_source_advection_diff_supg_subtype :
equations_set_constants
equations_set_exp_source_ale_advection_diff_supg_subtype :
equations_set_constants
equations_set_exp_source_ale_advection_diffusion_subtype :
equations_set_constants
equations_set_exponential_source_advection_diffusion_subtype :
equations_set_constants
equations_set_exponential_source_ale_diffusion_subtype :
equations_set_constants
equations_set_exponential_source_diffusion_equation_one_dim_1 :
equations_set_constants
equations_set_exponential_source_diffusion_subtype :
equations_set_constants
equations_set_exponential_source_poisson_subtype :
equations_set_constants
equations_set_extracellular_bidomain_poisson_subtype :
equations_set_constants
equations_set_fd_solution_method :
equations_set_constants
equations_set_fem_solution_method :
equations_set_constants
equations_set_finite_elasticity_cylinder :
equations_set_constants
equations_set_finite_elasticity_darcy_type :
equations_set_constants
equations_set_finite_elasticity_navier_stokes_ale_subtype :
equations_set_constants
equations_set_finite_elasticity_navier_stokes_type :
equations_set_constants
equations_set_finite_elasticity_stokes_type :
equations_set_constants
equations_set_finite_elasticity_type :
equations_set_constants
equations_set_first_bidomain_subtype :
equations_set_constants
equations_set_fitted_pressure_poisson_subtype :
equations_set_constants
equations_set_fitting_class :
equations_set_constants
equations_set_fluid_mechanics_class :
equations_set_constants
equations_set_fv_solution_method :
equations_set_constants
equations_set_generalised_burgers_equation_one_dim_1 :
equations_set_constants
equations_set_generalised_burgers_equation_one_dim_2 :
equations_set_constants
equations_set_generalised_burgers_subtype :
equations_set_constants
equations_set_generalised_data_fitting_subtype :
equations_set_constants
equations_set_generalised_helmholtz_subtype :
equations_set_constants
equations_set_generalised_hj_subtype :
equations_set_constants
equations_set_generalised_laplace_subtype :
equations_set_constants
equations_set_gfd_solution_method :
equations_set_constants
equations_set_gfem_solution_method :
equations_set_constants
equations_set_gfv_solution_method :
equations_set_constants
equations_set_guccione_activecontraction_subtype :
equations_set_constants
equations_set_helmholtz_equation_two_dim_1 :
equations_set_constants
equations_set_helmholtz_equation_type :
equations_set_constants
equations_set_hj_equation_three_dim_1 :
equations_set_constants
equations_set_hj_equation_three_dim_2 :
equations_set_constants
equations_set_hj_equation_two_dim_1 :
equations_set_constants
equations_set_hj_equation_two_dim_2 :
equations_set_constants
equations_set_hj_equation_type :
equations_set_constants
equations_set_holzapfel_ogden_activecontraction_subtype :
equations_set_constants
equations_set_incomp_elast_darcy_analytic_darcy :
equations_set_constants
equations_set_incompressible_elast_multi_comp_darcy_subtype :
equations_set_constants
equations_set_incompressible_elasticity_driven_darcy_subtype :
equations_set_constants
equations_set_incompressible_elasticity_driven_mr_subtype :
equations_set_constants
equations_set_incompressible_finite_elasticity_darcy_subtype :
equations_set_constants
equations_set_incompressible_mooney_rivlin_subtype :
equations_set_constants
equations_set_inviscid_burgers_subtype :
equations_set_constants
equations_set_isotropic_exponential_subtype :
equations_set_constants
equations_set_laplace_equation_three_dim_1 :
equations_set_constants
equations_set_laplace_equation_three_dim_2 :
equations_set_constants
equations_set_laplace_equation_two_dim_1 :
equations_set_constants
equations_set_laplace_equation_two_dim_2 :
equations_set_constants
equations_set_laplace_equation_type :
equations_set_constants
equations_set_laplace_navier_stokes_subtype :
equations_set_constants
equations_set_laplace_stokes_subtype :
equations_set_constants
equations_set_linear_elastic_modal_type :
equations_set_constants
equations_set_linear_elasticity_one_dim_1 :
equations_set_constants
equations_set_linear_elasticity_three_dim_1 :
equations_set_constants
equations_set_linear_elasticity_three_dim_2 :
equations_set_constants
equations_set_linear_elasticity_two_dim_1 :
equations_set_constants
equations_set_linear_elasticity_two_dim_2 :
equations_set_constants
equations_set_linear_elasticity_type :
equations_set_constants
equations_set_linear_pressure_poisson_subtype :
equations_set_constants
equations_set_linear_source_advection_diff_supg_subtype :
equations_set_constants
equations_set_linear_source_advection_diffusion_subtype :
equations_set_constants
equations_set_linear_source_ale_advection_diff_supg_subtype :
equations_set_constants
equations_set_linear_source_ale_advection_diffusion_subtype :
equations_set_constants
equations_set_linear_source_ale_diffusion_subtype :
equations_set_constants
equations_set_linear_source_diffusion_equation_three_dim_1 :
equations_set_constants
equations_set_linear_source_diffusion_subtype :
equations_set_constants
equations_set_linear_source_poisson_subtype :
equations_set_constants
equations_set_linear_source_static_advec_diff_subtype :
equations_set_constants
equations_set_linear_source_static_advec_diff_supg_subtype :
equations_set_constants
equations_set_magnetostatic_type :
equations_set_constants
equations_set_mat_properties_data_fitting_subtype :
equations_set_constants
equations_set_mat_properties_inria_model_data_fitting_subtype :
equations_set_constants
equations_set_maxwells_equations_type :
equations_set_constants
equations_set_membrane_subtype :
equations_set_constants
equations_set_modal_class :
equations_set_constants
equations_set_monodomain_buenoorovio_subtype :
equations_set_constants
equations_set_monodomain_elasticity_velocity_subtype :
equations_set_constants
equations_set_monodomain_elasticity_w_titin_subtype :
equations_set_constants
equations_set_monodomain_equation_type :
equations_set_constants
equations_set_monodomain_strang_splitting_equation_type :
equations_set_constants
equations_set_monodomain_tentusscher06_subtype :
equations_set_constants
equations_set_mooney_rivlin_activecontraction_subtype :
equations_set_constants
equations_set_mooney_rivlin_subtype :
equations_set_constants
equations_set_moving_mesh_hj_subtype :
equations_set_constants
equations_set_moving_mesh_laplace_subtype :
equations_set_constants
equations_set_multi_comp_diffusion_four_comp_three_dim :
equations_set_constants
equations_set_multi_comp_diffusion_three_comp_three_dim :
equations_set_constants
equations_set_multi_comp_diffusion_two_comp_three_dim :
equations_set_constants
equations_set_multi_comp_diffusion_two_comp_two_dim :
equations_set_constants
equations_set_multi_comp_transport_advec_diff_subtype :
equations_set_constants
equations_set_multi_comp_transport_advec_diff_supg_subtype :
equations_set_constants
equations_set_multi_comp_transport_diffusion_subtype :
equations_set_constants
equations_set_multi_compartment_darcy_subtype :
equations_set_constants
equations_set_multi_physics_class :
equations_set_constants
equations_set_multiscale3d_navier_stokes_subtype :
equations_set_constants
equations_set_multiscale_active_strain_subtype :
equations_set_constants
equations_set_navier_stokes_equation_flowrate_aorta :
equations_set_constants
equations_set_navier_stokes_equation_flowrate_constant :
equations_set_constants
equations_set_navier_stokes_equation_flowrate_heart :
equations_set_constants
equations_set_navier_stokes_equation_flowrate_olufsen :
equations_set_constants
equations_set_navier_stokes_equation_one_dim_1 :
equations_set_constants
equations_set_navier_stokes_equation_sinusoid :
equations_set_constants
equations_set_navier_stokes_equation_splint_from_file :
equations_set_constants
equations_set_navier_stokes_equation_three_dim_1 :
equations_set_constants
equations_set_navier_stokes_equation_three_dim_2 :
equations_set_constants
equations_set_navier_stokes_equation_three_dim_3 :
equations_set_constants
equations_set_navier_stokes_equation_three_dim_4 :
equations_set_constants
equations_set_navier_stokes_equation_three_dim_5 :
equations_set_constants
equations_set_navier_stokes_equation_two_dim_1 :
equations_set_constants
equations_set_navier_stokes_equation_two_dim_2 :
equations_set_constants
equations_set_navier_stokes_equation_two_dim_3 :
equations_set_constants
equations_set_navier_stokes_equation_two_dim_4 :
equations_set_constants
equations_set_navier_stokes_equation_two_dim_5 :
equations_set_constants
equations_set_navier_stokes_equation_two_dim_poiseuille :
equations_set_constants
equations_set_navier_stokes_equation_two_dim_taylor_green :
equations_set_constants
equations_set_navier_stokes_equation_type :
equations_set_constants
equations_set_nearly_incompressible_mooney_rivlin_subtype :
equations_set_constants
equations_set_no_class :
equations_set_constants
equations_set_no_source_advection_diff_supg_subtype :
equations_set_constants
equations_set_no_source_advection_diffusion_subtype :
equations_set_constants
equations_set_no_source_ale_advection_diff_supg_subtype :
equations_set_constants
equations_set_no_source_ale_advection_diffusion_subtype :
equations_set_constants
equations_set_no_source_ale_diffusion_subtype :
equations_set_constants
equations_set_no_source_diffusion_subtype :
equations_set_constants
equations_set_no_source_static_advec_diff_subtype :
equations_set_constants
equations_set_no_source_static_advec_diff_supg_subtype :
equations_set_constants
equations_set_no_subtype :
equations_set_constants
equations_set_no_type :
equations_set_constants
equations_set_nodal_solution_method :
equations_set_constants
equations_set_nonlinear_pressure_poisson_subtype :
equations_set_constants
equations_set_number_of_derived_types :
equations_set_constants
equations_set_number_of_tensor_evaluate_types :
equations_set_constants
equations_set_one_dimensional_subtype :
equations_set_constants
equations_set_optimisation_class :
equations_set_constants
equations_set_optimised_navier_stokes_subtype :
equations_set_constants
equations_set_optimised_stokes_subtype :
equations_set_constants
equations_set_orthotropic_material_costa_subtype :
equations_set_constants
equations_set_orthotropic_material_holzapfel_ogden_subtype :
equations_set_constants
equations_set_pgm_navier_stokes_subtype :
equations_set_constants
equations_set_pgm_stokes_subtype :
equations_set_constants
equations_set_plate_subtype :
equations_set_constants
equations_set_poiseuille_equation_two_dim_1 :
equations_set_constants
equations_set_poiseuille_equation_type :
equations_set_constants
equations_set_poisson_equation_three_dim_1 :
equations_set_constants
equations_set_poisson_equation_three_dim_2 :
equations_set_constants
equations_set_poisson_equation_three_dim_3 :
equations_set_constants
equations_set_poisson_equation_two_dim_1 :
equations_set_constants
equations_set_poisson_equation_two_dim_2 :
equations_set_constants
equations_set_poisson_equation_two_dim_3 :
equations_set_constants
equations_set_poisson_equation_type :
equations_set_constants
equations_set_pressure_poisson_three_dim_1 :
equations_set_constants
equations_set_pressure_poisson_three_dim_2 :
equations_set_constants
equations_set_quad_source_advection_diff_supg_subtype :
equations_set_constants
equations_set_quad_source_ale_advection_diff_supg_subtype :
equations_set_constants
equations_set_quadratic_source_advection_diffusion_subtype :
equations_set_constants
equations_set_quadratic_source_ale_advection_diffusion_subtype :
equations_set_constants
equations_set_quadratic_source_ale_diffusion_subtype :
equations_set_constants
equations_set_quadratic_source_diffusion_equation_one_dim_1 :
equations_set_constants
equations_set_quadratic_source_diffusion_subtype :
equations_set_constants
equations_set_quadratic_source_poisson_subtype :
equations_set_constants
equations_set_quasistatic_darcy_subtype :
equations_set_constants
equations_set_quasistatic_navier_stokes_subtype :
equations_set_constants
equations_set_reaction_diffusion_equation_type :
equations_set_constants
equations_set_reference_state_mooney_rivlin_subtype :
equations_set_constants
equations_set_second_bidomain_subtype :
equations_set_constants
equations_set_setup_analytic_type :
equations_set_constants
equations_set_setup_dependent_type :
equations_set_constants
equations_set_setup_derived_type :
equations_set_constants
equations_set_setup_equations_type :
equations_set_constants
equations_set_setup_finish_action :
equations_set_constants
equations_set_setup_generate_action :
equations_set_constants
equations_set_setup_geometry_type :
equations_set_constants
equations_set_setup_independent_type :
equations_set_constants
equations_set_setup_initial_type :
equations_set_constants
equations_set_setup_materials_type :
equations_set_constants
equations_set_setup_source_materials_type :
equations_set_constants
equations_set_setup_source_type :
equations_set_constants
equations_set_setup_start_action :
equations_set_constants
equations_set_shell_subtype :
equations_set_constants
equations_set_standard_darcy_subtype :
equations_set_constants
equations_set_standard_data_fitting_subtype :
equations_set_constants
equations_set_standard_elasticity_darcy_subtype :
equations_set_constants
equations_set_standard_helmholtz_subtype :
equations_set_constants
equations_set_standard_hj_subtype :
equations_set_constants
equations_set_standard_laplace_subtype :
equations_set_constants
equations_set_standard_monodomain_elasticity_subtype :
equations_set_constants
equations_set_static_burgers_equation_one_dim_1 :
equations_set_constants
equations_set_static_burgers_subtype :
equations_set_constants
equations_set_static_navier_stokes_subtype :
equations_set_constants
equations_set_static_poiseuille_subtype :
equations_set_constants
equations_set_static_rbs_navier_stokes_subtype :
equations_set_constants
equations_set_static_stokes_subtype :
equations_set_constants
equations_set_stokes_equation_three_dim_1 :
equations_set_constants
equations_set_stokes_equation_three_dim_2 :
equations_set_constants
equations_set_stokes_equation_three_dim_3 :
equations_set_constants
equations_set_stokes_equation_three_dim_4 :
equations_set_constants
equations_set_stokes_equation_three_dim_5 :
equations_set_constants
equations_set_stokes_equation_two_dim_1 :
equations_set_constants
equations_set_stokes_equation_two_dim_2 :
equations_set_constants
equations_set_stokes_equation_two_dim_3 :
equations_set_constants
equations_set_stokes_equation_two_dim_4 :
equations_set_constants
equations_set_stokes_equation_two_dim_5 :
equations_set_constants
equations_set_stokes_equation_type :
equations_set_constants
equations_set_stree1d0d_adv_subtype :
equations_set_constants
equations_set_stree1d0d_subtype :
equations_set_constants
equations_set_stree_equation_type :
equations_set_constants
equations_set_stvenant_kirchoff_activecontraction_subtype :
equations_set_constants
equations_set_three_dimensional_subtype :
equations_set_constants
equations_set_trans_isotropic_active_transition_subtype :
equations_set_constants
equations_set_transient1d_adv_navier_stokes_subtype :
equations_set_constants
equations_set_transient1d_navier_stokes_subtype :
equations_set_constants
equations_set_transient_ale_darcy_subtype :
equations_set_constants
equations_set_transient_darcy_subtype :
equations_set_constants
equations_set_transient_navier_stokes_subtype :
equations_set_constants
equations_set_transient_rbs_navier_stokes_subtype :
equations_set_constants
equations_set_transient_stokes_subtype :
equations_set_constants
equations_set_transverse_isotropic_active_subtype :
equations_set_constants
equations_set_transverse_isotropic_exponential_subtype :
equations_set_constants
equations_set_transverse_isotropic_guccione_subtype :
equations_set_constants
equations_set_transverse_isotropic_humphrey_yin_subtype :
equations_set_constants
equations_set_transverse_isotropic_polynomial_subtype :
equations_set_constants
equations_set_two_dimensional_plane_strain_subtype :
equations_set_constants
equations_set_two_dimensional_plane_stress_subtype :
equations_set_constants
equations_set_vector_data_fitting_subtype :
equations_set_constants
equations_set_vector_data_pre_fitting_subtype :
equations_set_constants
equations_set_wave_equation_type :
equations_set_constants
equations_sparse_matrices :
equations_routines
equations_static :
equations_set_constants
equations_time_stepping :
equations_set_constants
equations_timing_output :
equations_routines
equations_unlumped_matrices :
equations_routines
equationsset_datapointvectorquasistaticfittingsubtype :
equations_set_constants
equationsset_datapointvectorstaticfittingsubtype :
equations_set_constants
error :
opencmiss_iron
error_output_type :
base_routines
error_separator_constant :
machine_constants
euler :
constants
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