electrophysiology_cell_routines Module Reference

Data Types
interface	pow

Functions/Subroutines
real(dp) function	powr (a, b)
real(dp) function	powi (a, b)
subroutine, public	bueno_orovio_initialize (field, err, error,)
subroutine	bueno_orovio_dydt (t, y, dydt, activ)
subroutine, public	bueno_orovio_integrate (cells, materials, t0, t1, err, error,)
subroutine, public	tentusscher06_initialize (field, err, error,)
subroutine	tentusscher06_dydt (t, y, dydt, activ)
subroutine, public	tentusscher06_integrate (cells, materials, t0, t1, err, error,)

Function/Subroutine Documentation

subroutine electrophysiology_cell_routines::bueno_orovio_dydt ( real(dp), intent(in)  t, real(dp), dimension(:), intent(in)  y, real(dp), dimension(:), intent(out)  dydt, real(dp), intent(in)  activ  )

private

Parameters

[out]	dydt	derivatives
[in]	y	current state
[in]	t	current time
[in]	activ	activation factor. 1 for default stimulus current, 0 for none

Definition at line 103 of file electrophysiology_cell_routines.f90.

Referenced by bueno_orovio_integrate().

subroutine, public electrophysiology_cell_routines::bueno_orovio_initialize	(	type(field_type), intent(inout), pointer	field,
		integer(intg), intent(out)	err,
		type(varying_string), intent(out)	error
	)

Parameters

[out]	err	The error code
[out]	error	The error string

Definition at line 83 of file electrophysiology_cell_routines.f90.

References base_routines::enters(), and base_routines::exits().

Referenced by monodomain_equations_routines::Monodomain_EquationsSetSubtypeSetup::monodomain_equationssetsubtypesetup().

subroutine, public electrophysiology_cell_routines::bueno_orovio_integrate	(	type(field_type), intent(inout), pointer	cells,
		type(field_type), intent(inout), pointer	materials,
		real(dp), intent(in)	t0,
		real(dp), intent(in)	t1,
		integer(intg), intent(out)	err,
		type(varying_string), intent(out)	error
	)

Parameters

[in,out]	materials	Independent field storing the cell data, and material field component 1 the activation flags
[in]	t1	Integrate from time t0 to t1
[out]	err	The error code
[out]	error	The error string

Definition at line 158 of file electrophysiology_cell_routines.f90.

References bueno_orovio_dydt(), base_routines::enters(), and base_routines::exits().

Referenced by monodomain_equations_routines::MONODOMAIN_POST_SOLVE::monodomain_post_solve().

real(dp) function electrophysiology_cell_routines::powi ( real(dp), intent(in)  a, integer(intg), intent(in)  b  )

private

Definition at line 74 of file electrophysiology_cell_routines.f90.

real(dp) function electrophysiology_cell_routines::powr ( real(dp), intent(in)  a, real(dp), intent(in)  b  )

private

Definition at line 70 of file electrophysiology_cell_routines.f90.

subroutine electrophysiology_cell_routines::tentusscher06_dydt ( real(dp), intent(in)  t, real(dp), dimension(:), intent(in)  y, real(dp), dimension(:), intent(out)  dydt, real(dp), intent(in)  activ  )

private

Parameters

[out]	dydt	derivatives
[in]	y	current state
[in]	t	current time
[in]	activ	activation factor. 1 for default stimulus current, 0 for none

Definition at line 247 of file electrophysiology_cell_routines.f90.

Referenced by tentusscher06_integrate().

subroutine, public electrophysiology_cell_routines::tentusscher06_initialize	(	type(field_type), intent(inout), pointer	field,
		integer(intg), intent(out)	err,
		type(varying_string), intent(out)	error
	)

Parameters

[out]	err	The error code
[out]	error	The error string

Definition at line 226 of file electrophysiology_cell_routines.f90.

References base_routines::enters(), and base_routines::exits().

Referenced by monodomain_equations_routines::Monodomain_EquationsSetSubtypeSetup::monodomain_equationssetsubtypesetup().

subroutine, public electrophysiology_cell_routines::tentusscher06_integrate	(	type(field_type), intent(inout), pointer	cells,
		type(field_type), intent(inout), pointer	materials,
		real(dp), intent(in)	t0,
		real(dp), intent(in)	t1,
		integer(intg), intent(out)	err,
		type(varying_string), intent(out)	error
	)

Parameters

[in,out]	materials	Independent field storing the cell data, and material field component 1 the activation flags
[in]	t1	Integrate from time t0 to t1
[out]	err	The error code
[out]	error	The error string

Definition at line 368 of file electrophysiology_cell_routines.f90.

References base_routines::enters(), base_routines::exits(), and tentusscher06_dydt().

Referenced by monodomain_equations_routines::MONODOMAIN_POST_SOLVE::monodomain_post_solve().