- Generated on Mon Apr 9 2018 20:02:25 for OpenCMISS-Iron Internal API Documentation by
1.8.11
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OpenCMISS-Iron Internal API Documentation
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This module handles all bioelectric class routines. More...
Functions/Subroutines | |
| subroutine, public | bioelectric_control_loop_post_loop (CONTROL_LOOP, ERR, ERROR,) |
| Executes after each loop of a control loop for bioelectric problems, i.e., after each time step for a time loop. More... | |
| subroutine, public | bioelectric_equationssetspecificationset (equationsSet, specification, err, error,) |
| Sets the problem specification for a bioelectric equation set class. More... | |
| subroutine, public | bioelectric_finite_element_calculate (EQUATIONS_SET, ELEMENT_NUMBER, ERR, ERROR,) |
| Calculates the element stiffness matries and rhs vector for the given element number for a bioelectric class finite element equation set. More... | |
| subroutine, public | bioelectric_equations_set_setup (EQUATIONS_SET, EQUATIONS_SET_SETUP, ERR, ERROR,) |
| Sets up the equations set for a bioelectric equations set class. More... | |
| subroutine, public | bioelectric_equationssetsolutionmethodset (EQUATIONS_SET, SOLUTION_METHOD, ERR, ERROR,) |
| Sets/changes the solution method for a bioelectric equation set class. More... | |
| subroutine, public | bioelectric_pre_solve (SOLVER, ERR, ERROR,) |
| Perform pre-solve actions for the bioelectrics problem class. More... | |
| subroutine, public | bioelectric_post_solve (SOLVER, ERR, ERROR,) |
| Performs post solve actions for a bioelectrics problem class. More... | |
| subroutine, public | bioelectric_problemspecificationset (problem, problemSpecification, err, error,) |
| Sets the problem specification for a bioelectric problem class. More... | |
| subroutine, public | bioelectric_problem_setup (PROBLEM, PROBLEM_SETUP, ERR, ERROR,) |
| Sets up the problem for a bioelectric problem class. More... | |
This module handles all bioelectric class routines.
| subroutine, public bioelectric_routines::bioelectric_control_loop_post_loop | ( | type(control_loop_type), pointer | CONTROL_LOOP, |
| integer(intg), intent(out) | ERR, | ||
| type(varying_string), intent(out) | ERROR | ||
| ) |
Executes after each loop of a control loop for bioelectric problems, i.e., after each time step for a time loop.
| control_loop | A pointer to the control loop to solve. | |
| [out] | err | The error code |
| [out] | error | The error string |
Definition at line 95 of file bioelectric_routines.f90.
References biodomain_equation_routines::biodomain_control_loop_post_loop(), base_routines::enters(), base_routines::exits(), problem_constants::problem_bidomain_equation_type, problem_constants::problem_control_time_loop_type, problem_constants::problem_monodomain_equation_type, and problem_constants::problem_monodomain_strang_splitting_equation_type.
| subroutine, public bioelectric_routines::bioelectric_equations_set_setup | ( | type(equations_set_type), pointer | EQUATIONS_SET, |
| type(equations_set_setup_type), intent(inout) | EQUATIONS_SET_SETUP, | ||
| integer(intg), intent(out) | ERR, | ||
| type(varying_string), intent(out) | ERROR | ||
| ) |
Sets up the equations set for a bioelectric equations set class.
| equations_set | A pointer to the equations set | |
| [in,out] | equations_set_setup | The equations set setup information |
| [out] | err | The error code |
| [out] | error | The error string |
Definition at line 237 of file bioelectric_routines.f90.
References biodomain_equation_routines::biodomain_equationssetsetup(), base_routines::enters(), equations_set_constants::equations_set_bidomain_equation_type, equations_set_constants::equations_set_monodomain_equation_type, and base_routines::exits().
Referenced by equations_set_routines::equations_set_setup().
| subroutine, public bioelectric_routines::bioelectric_equationssetsolutionmethodset | ( | type(equations_set_type), pointer | EQUATIONS_SET, |
| integer(intg), intent(in) | SOLUTION_METHOD, | ||
| integer(intg), intent(out) | ERR, | ||
| type(varying_string), intent(out) | ERROR | ||
| ) |
Sets/changes the solution method for a bioelectric equation set class.
| equations_set | A pointer to the equations set to set the solution method for | |
| [in] | solution_method | The solution method to set |
| [out] | err | The error code |
| [out] | error | The error string |
Definition at line 281 of file bioelectric_routines.f90.
References biodomain_equation_routines::biodomain_equationssetsolutionmethodset(), base_routines::enters(), equations_set_constants::equations_set_bidomain_equation_type, equations_set_constants::equations_set_monodomain_equation_type, and base_routines::exits().
Referenced by equations_set_routines::equations_set_solution_method_set().
| subroutine, public bioelectric_routines::bioelectric_equationssetspecificationset | ( | type(equations_set_type), pointer | equationsSet, |
| integer(intg), dimension(:), intent(in) | specification, | ||
| integer(intg), intent(out) | err, | ||
| type(varying_string), intent(out) | error | ||
| ) |
Sets the problem specification for a bioelectric equation set class.
| equationsset | A pointer to the equations set | |
| [in] | specification | The equations specification to set |
| [out] | err | The error code |
| [out] | error | The error string |
Definition at line 149 of file bioelectric_routines.f90.
References biodomain_equation_routines::biodomain_equationssetspecificationset(), base_routines::enters(), equations_set_constants::equations_set_bidomain_equation_type, equations_set_constants::equations_set_monodomain_equation_type, base_routines::errors(), and base_routines::exits().
Referenced by equations_set_routines::equationsset_specificationset().
| subroutine, public bioelectric_routines::bioelectric_finite_element_calculate | ( | type(equations_set_type), pointer | EQUATIONS_SET, |
| integer(intg), intent(in) | ELEMENT_NUMBER, | ||
| integer(intg), intent(out) | ERR, | ||
| type(varying_string), intent(out) | ERROR | ||
| ) |
Calculates the element stiffness matries and rhs vector for the given element number for a bioelectric class finite element equation set.
| equations_set | A pointer to the equations set | |
| [in] | element_number | The element number to calcualate |
| [out] | err | The error code |
| [out] | error | The error string |
Definition at line 193 of file bioelectric_routines.f90.
References biodomain_equation_routines::biodomain_equation_finite_element_calculate(), base_routines::enters(), equations_set_constants::equations_set_bidomain_equation_type, equations_set_constants::equations_set_monodomain_equation_type, and base_routines::exits().
Referenced by equations_set_routines::equations_set_finite_element_calculate().
| subroutine, public bioelectric_routines::bioelectric_post_solve | ( | type(solver_type), pointer | SOLVER, |
| integer(intg), intent(out) | ERR, | ||
| type(varying_string), intent(out) | ERROR | ||
| ) |
Performs post solve actions for a bioelectrics problem class.
| solver | A pointer to the solver | |
| [out] | err | The error code |
| [out] | error | The error string |
Definition at line 386 of file bioelectric_routines.f90.
References base_routines::enters(), base_routines::exits(), problem_constants::problem_bidomain_equation_type, problem_constants::problem_bioelectric_finite_elasticity_type, problem_constants::problem_monodomain_equation_type, and problem_constants::problem_monodomain_strang_splitting_equation_type.
Referenced by bioelectric_finite_elasticity_routines::bioelectric_finite_elasticity_post_solve().
| subroutine, public bioelectric_routines::bioelectric_pre_solve | ( | type(solver_type), pointer | SOLVER, |
| integer(intg), intent(out) | ERR, | ||
| type(varying_string), intent(out) | ERROR | ||
| ) |
Perform pre-solve actions for the bioelectrics problem class.
| solver | A pointer to the solver | |
| [out] | err | The error code |
| [out] | error | The error string |
Definition at line 326 of file bioelectric_routines.f90.
References biodomain_equation_routines::biodomain_pre_solve(), base_routines::enters(), base_routines::exits(), problem_constants::problem_bidomain_equation_type, problem_constants::problem_monodomain_equation_type, and problem_constants::problem_monodomain_strang_splitting_equation_type.
| subroutine, public bioelectric_routines::bioelectric_problem_setup | ( | type(problem_type), pointer | PROBLEM, |
| type(problem_setup_type), intent(inout) | PROBLEM_SETUP, | ||
| integer(intg), intent(out) | ERR, | ||
| type(varying_string), intent(out) | ERROR | ||
| ) |
Sets up the problem for a bioelectric problem class.
| problem | A pointer to the problem | |
| [in,out] | problem_setup | The problem setup information |
| [out] | err | The error code |
| [out] | error | The error string |
Definition at line 493 of file bioelectric_routines.f90.
References biodomain_equation_routines::biodomain_equation_problem_setup(), base_routines::enters(), base_routines::exits(), problem_constants::problem_bidomain_equation_type, problem_constants::problem_monodomain_equation_type, and problem_constants::problem_monodomain_strang_splitting_equation_type.
| subroutine, public bioelectric_routines::bioelectric_problemspecificationset | ( | type(problem_type), pointer | problem, |
| integer(intg), dimension(:), intent(in) | problemSpecification, | ||
| integer(intg), intent(out) | err, | ||
| type(varying_string), intent(out) | error | ||
| ) |
Sets the problem specification for a bioelectric problem class.
| problem | A pointer to the problem to set the specification for. | |
| [in] | problemspecification | The problem specification to set. |
| [out] | err | The error code |
| [out] | error | The error string |
Definition at line 447 of file bioelectric_routines.f90.
References biodomain_equation_routines::biodomain_problemspecificationset(), base_routines::enters(), base_routines::errors(), base_routines::exits(), problem_constants::problem_bidomain_equation_type, problem_constants::problem_monodomain_equation_type, and problem_constants::problem_monodomain_strang_splitting_equation_type.
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